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April 9, 2025 | Orthodontics

Invisalign Care 101: How to Keep Your Aligners Clean and Clear

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If you’ve chosen to straighten your teeth using Invisalign, you already know it’s one of the most discreet and convenient orthodontic treatments available. But while Invisalign aligners are virtually invisible, they can quickly become cloudy, stained, and worse if they’re not cared for properly.

Failing to keep them clean can lead to unpleasant odours, bacterial buildup, and even impact your oral health. Fortunately, with the proper habits, keeping your aligners fresh and clear is very easy.

At The London Smile Clinic, we want to ensure that your Invisalign journey is as smooth as possible, and we’re always on hand to support you. 

In this guide, we’ll cover the best ways to clean your aligners, what to avoid, and how to keep your treatment on track.

The Problem with Dirty Aligners

Although you’ll only wear each aligner for around two weeks, this short period is still long enough for them to become so dirty that it’s a problem. 

If you don’t take proper care of your aligner, it can lead to several issues, including:

  • Staining and discolouration: Aligners can turn yellow or cloudy, making them much more noticeable when worn.
  • Bad breath: Bacteria and food particles trapped in your aligners can create an unpleasant odour.
  • Increased risk of cavities and gum disease: Dirty aligners can harbour bacteria, leading to plaque buildup on your teeth.
  • Warping or damage: Using the wrong cleaning methods can weaken the plastic, affecting how well your aligners fit.

Thankfully, the right care routine can easily avoid these problems. 

How Invisalign Works (A Quick Overview)

Before we dive into the cleaning routine, here’s a quick refresher on how Invisalign treatment works. Invisalign uses a series of clear, removable aligners to straighten your teeth gradually. Each set of aligners is worn for about 1–2 weeks before moving to the next in the series.

To get the expected results, you must wear your aligners for 20–22 hours per day and remove them only for eating, drinking (except water), and cleaning. Since they are removable, your aligners will require regular cleaning to keep them translucent and hygienic.

Your Daily Cleaning Routine for Invisalign Aligners

Following a simple daily routine will ensure your aligners remain fresh and free from bacteria:

1. Rinse Immediately After Removing

When you remove your aligners, rinse them under lukewarm water to remove food debris and saliva and prevent bacteria from drying onto the surface. Avoid hot water, which can warp the plastic and affect the fit.

2. Brush Gently 

Brushing your aligners at least twice a day is essential. However, avoid using regular toothpaste, as it can be too abrasive and create tiny scratches where bacteria can thrive. 

To ensure your aligners are kept clean:

  • Use a soft-bristled toothbrush with lukewarm water.
  • Gently brush the inside and outside of the aligners to remove plaque and debris.
  • Rinse thoroughly before putting them back in your mouth.

3. Soak Once a Day

Soaking your aligners helps to keep them clear and odour-free. You can do this using a gentle aligner cleaning solution. After soaking them for a few minutes, gently brush and rinse them before wearing them again.

4. Keep Your Teeth Clean

Your aligners are only as clean as your teeth. If you put them back in after eating without brushing, food particles get trapped, increasing the risk of staining and decay. 

Always remember to:

  • Brush and floss before reinserting your aligners.
  • Use a fluoride toothpaste to strengthen your enamel.

You may want to carry a travel toothbrush and toothpaste whenever you’re out of the house for the day. That way, you can brush your teeth wherever you are. 

If brushing isn’t possible, at least rinse your mouth with water before putting your aligners back in.

What to Avoid When Cleaning Invisalign Aligners

There are times when the best intentions lead to stained or misshapen aligners. Some common mistakes can damage your aligners or make them more noticeable. Here’s what not to do:

  • Avoid toothpaste and harsh cleaners: They can create tiny scratches, making aligners look dull and more prone to staining.
  • Don’t use hot water: It can warp your aligners, making them ineffective.
  • Skip coloured or scented soaps: They can leave a residue and give your aligners an unpleasant taste.
  • Never leave them exposed: When not in your mouth, store your aligners in their protective case to avoid bacteria buildup and accidental loss or damage.

How To Keep Your Aligners Clear and Stain-Free

Aligners are designed to be nearly invisible, but certain habits can cause discolouration. To keep them looking clear:

  • Only drink water when wearing aligners: Tea, coffee, wine, and fizzy drinks can stain or cause buildup. Stick to cold water when your aligner is in, and remove it before enjoying anything else. 
  • Avoid foods that could stain your teeth: Dark berries, spicy foods, and certain sauces can all discolour your teeth. Brush your teeth immediately after eating anything that leaves its mark. 
  • Remove your aligners before eating: Even soft foods can leave residue that leads to staining. Not only that, but chewing anything could damage or warp your aligner. 
  • Don’t smoke while wearing your aligners: Smoking can cause severe yellowing and odours. Even if you smoke without your aligner in, the nicotine and tar could transfer to the inside of your trays. 
  • Clean your aligners before bed: Bacteria multiply overnight, so ensure your trays are clean before sleeping. Cleaning your aligner before bed is essential, just like brushing your teeth. 

What Should You Do If Your Aligners Become Stained, Smelly, or Warped?

If your aligners have already developed stains or an unpleasant smell, try giving them an extra-long soak in a mild cleaning solution. Extra scrubbing may also help remove

If your stains persist, or your aligner is warped or damaged, contact us. We can advise on professional cleaning options or whether a replacement set is needed.

Invisalign In London

Caring for your Invisalign aligners is easy when you stick to a simple routine. By keeping them clean and clear, you’ll ensure they remain invisible while protecting your oral health.

At The London Smile Clinic, we’re here to help you every step of the way on your Invisalign journey. If you have any concerns about your aligners or need personalised advice, don’t hesitate to reach out. 

Contact us today to book your Invisalign appointment.

What our patients say

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Mathias

After years of casual dentist visits I decided to give London Smile Clinic a try with teeth straightening, whitening, bonding and large composite fillings. The results have been exceptional and I'm incredibly happy with my new smile! Shout out to Emma, Padhraig, Anna, and Tim for their excellent work. Highly recommended practice - look no further.

After years of casual dentist visits I decided to give London Smile Clinic a try with teeth straightening, whitening, bonding and large composite fillings. The results have been exceptional and I'm incredibly happy with my new smile! Shout out to Emma, Padhraig, Anna, and Tim for their excellent work. Highly recommended practice - look no further.

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Tracey

Dr Bradstock-Smith fitted my six veneers approx 23 years ago (all in the top row). I popped in to the clinic today for my first veneer check up in 19 years and I’m pleased to say that my veneers are still in great shape. Thanks for helping to keep me smiling all these years!

Dr Bradstock-Smith fitted my six veneers approx 23 years ago (all in the top row). I popped in to the clinic today for my first veneer check up in 19 years and I’m pleased to say that my veneers are still in great shape. Thanks for helping to keep me smiling all these years!

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Steven

I have been a patient at The London Smile Clinic for several years now and have undergone general, orthodontic and cosmetic dentistry work. I am extremely pleased with the results and friends and family compliment me on my teeth and smile, which have never looked better. The staff are so friendly, considerate and professional. I highly recommend The London Smile...

I have been a patient at The London Smile Clinic for several years now and have undergone general, orthodontic and cosmetic dentistry work. I am extremely pleased with the results and friends and family compliment me on my teeth and smile, which have never looked better. The staff are so friendly, considerate and professional. I highly recommend The London Smile Clinic to anyone who wants to improve or update their smile!

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Talal

The crème de la creme of dentists globally. I’ve been to many practices around the world. This is the best of the best hands down.

The crème de la creme of dentists globally. I’ve been to many practices around the world. This is the best of the best hands down.

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Nadia

The London Smile Clinic is the best dental practice . I have been to many dentists and this is by far the best. Always friendly, efficient & professional. I had my teeth cleaned and whitened by Tim and Shazia. I absolutely love the results I am very grateful to the entire team.

The London Smile Clinic is the best dental practice . I have been to many dentists and this is by far the best. Always friendly, efficient & professional. I had my teeth cleaned and whitened by Tim and Shazia. I absolutely love the results I am very grateful to the entire team.

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Colin

Sonia is genuinely, hands down, the best dentist I've seen. Plus, the Clinic has some tremendous gadgets there. Which, as they were 22 years ago when I first visited, keeps them ahead of any other dentistry practice ive come across. They do dentistry really well and make it as pleasant an experience as possible. They fixed my smile 22 years...

Sonia is genuinely, hands down, the best dentist I've seen. Plus, the Clinic has some tremendous gadgets there. Which, as they were 22 years ago when I first visited, keeps them ahead of any other dentistry practice ive come across. They do dentistry really well and make it as pleasant an experience as possible. They fixed my smile 22 years ago with veneers, and the first one only came off recently. All the more impressive as I am rather careless with my teeth at times and I am a tooth grinder when I sleep. Cant fault them - even if they are not exactly cheap - but well worth it, So 5 stars from me.

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Sue

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Always a positive experience at the London Smile Clinic, from the welcome at Reception to the consultation and treatment from the dentists, specialists and hygienists. The best dental treatment I've ever received.

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Christopher

Orthodontic treatment, whitening and bonding. My journey started a little over a year ago. At the age of 55 i had given up hope of ever having a smile to be proud of. On arriving i was greeted with friendly smiling faces from the lovely girls at reception, instantly putting me at ease, shown to a relaxing bright waiting room. Long...

Orthodontic treatment, whitening and bonding. My journey started a little over a year ago. At the age of 55 i had given up hope of ever having a smile to be proud of. On arriving i was greeted with friendly smiling faces from the lovely girls at reception, instantly putting me at ease, shown to a relaxing bright waiting room. Long story short, after the magical treatment from all the team Dr Sharma, Anna, Bonnie and Michelle i now have the most amazing smile. I can never thank you enough for what you have given me, after 15 years my partner now has a man who can smile at her and with her x

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